What is RiceArrayNet?
RiceArrayNet (RAN), that provides co-expression information between genes in terms of correlation coefficients from accumulated Rice 60k microarray. Given the correlation of a gene pair, the degrees of closeness between genes are calculated using a 'neighbor-joining' method and are visualized in a relational tree. In addition, RAN supports scatter plots of log ratios between genes and links them to pathway maps, while providing a common cis-element list of promoter regions that are involved.
Rice 60k Microarray
Rice 60k Microarray contains 60,727 70mer-oligonucleotides that represent 58,417 genes, including those that are predicted. As of Apr. 2008, expression data from 182 microarrays for 20 organs and 50 different treatments have been accumulated.
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Release Notes
Feb. 20, 2009
The network drawing function is added in order to show relations between genes with the network.
Jan. 29, 2009
The default tree viewer program is changed to ATV (A Tree Viewer).
Jan. 11, 2009
Two columns which contain the IRGSP gene name and the TIGR Locus name column respectively, are added in a spot information table.
Contacting Information
Please send comments, corrections and requests for additional information to Jiye Kim or Tae-Ho Lee.
Copyright
Copyright GreenGene BioTech Inc., 2007-2009. All Rights Reserved.